[{"command":"openDialog","selector":"#drupal-modal","settings":null,"data":"\u003Cdiv id=\u0022republish_modal_form\u0022\u003E\u003Cform class=\u0022modal-form-example-modal-form ecl-form\u0022 data-drupal-selector=\u0022modal-form-example-modal-form\u0022 action=\u0022\/en\/article\/modal\/10675\u0022 method=\u0022post\u0022 id=\u0022modal-form-example-modal-form\u0022 accept-charset=\u0022UTF-8\u0022\u003E\u003Cp\u003EHorizon articles can be republished for free under the Creative Commons Attribution 4.0 International (CC BY 4.0) licence.\u003C\/p\u003E\n \u003Cp\u003EYou must give appropriate credit. We ask you to do this by:\u003Cbr \/\u003E\n 1) Using the original journalist\u0027s byline\u003Cbr \/\u003E\n 2) Linking back to our original story\u003Cbr \/\u003E\n 3) Using the following text in the footer: This article was originally published in \u003Ca href=\u0027#\u0027\u003EHorizon, the EU Research and Innovation magazine\u003C\/a\u003E\u003C\/p\u003E\n \u003Cp\u003ESee our full republication guidelines \u003Ca href=\u0027\/horizon-magazine\/republish-our-stories\u0027\u003Ehere\u003C\/a\u003E\u003C\/p\u003E\n \u003Cp\u003EHTML for this article, including the attribution and page view counter, is below:\u003C\/p\u003E\u003Cdiv class=\u0022js-form-item form-item js-form-type-textarea form-item-body-content js-form-item-body-content ecl-form-group ecl-form-group--text-area form-no-label ecl-u-mv-m\u0022\u003E\n \n\u003Cdiv\u003E\n \u003Ctextarea data-drupal-selector=\u0022edit-body-content\u0022 aria-describedby=\u0022edit-body-content--description\u0022 id=\u0022edit-body-content\u0022 name=\u0022body_content\u0022 rows=\u00225\u0022 cols=\u002260\u0022 class=\u0022form-textarea ecl-text-area\u0022\u003E\u003Ch2\u003ENew clues to age-old illnesses emerge in the gut \u003C\/h2\u003E\u003Cp\u003EHealth in body and mind may well be rooted in the gut.\u003C\/p\u003E\n\n\u003Cp\u003EThe trillions of bacteria, archaea, fungi and viruses in the human body \u2013 collectively called the microbiome \u2013 vary enormously from person to person. What\u2019s more, the differences can have a big impact on physical and mental health.\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cstrong\u003EDeciphering chatter\u003C\/strong\u003E\u003C\/p\u003E\n\n\u003Cp\u003EUnderstanding more about the links between the microbiome and chronic illnesses such as diabetes, inflammatory bowel disease and obesity is a top European goal, promising new ways to tackle age-old ailments.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018One really needs to look at the system in all of its complexity, as it exists in nature, rather than just study single strains or even a few microbes in a dish,\u2019 said Paul Wilmes, a microbial ecology professor at the University of Luxembourg.\u003C\/p\u003E\n\n\u003Cp\u003EThrough their diet, humans feed a mostly benign zoo of microbes in the gut. In turn, this microbiome affects people\u2019s health by churning out a steady stream of molecules, some of which influence and help regulate the immune system.\u003C\/p\u003E\n\n\u003Cp\u003EWilmes leads a research project that has received EU funding to investigate differences between healthy and sick people. The five-year \u003Ca href=\u0022https:\/\/cordis.europa.eu\/project\/id\/863664\u0022\u003EExpoBiome\u003C\/a\u003E initiative, which runs through October 2025, is identifying communities of bacteria and fungi involved in disease processes.\u003C\/p\u003E\n\n\u003Cp\u003EParkinson\u2019s disease and rheumatoid arthritis are the focal points.\u003C\/p\u003E\n\n\u003Cp\u003EThe gut microbiome is the largest and most important microbial community of the human body.\u003C\/p\u003E\n\n\u003Cp\u003EThis community is in constant, complex cross-talk with cells such as those in the liver and brain. The interactions which include previously unknown microbial molecules, reveal surprising links with familiar illnesses.\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cstrong\u003EParkinson\u2019s puzzle\u003C\/strong\u003E\u003C\/p\u003E\n\n\u003Cp\u003EParkinson\u2019s disease, for example, is a disorder of the nervous system that causes uncontrollable shaking and difficulties with balance and coordination.\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cblockquote class=\u0022tw-text-center tw-text-blue tw-font-bold tw-text-2xl lg:tw-w-1\/2 tw-border-2 tw-border-blue tw-p-12 tw-my-8 lg:tw-m-12 lg:tw--ml-16 tw-float-left\u0022\u003E\n \u003Cspan class=\u0022tw-text-5xl tw-rotate-180\u0022\u003E\u201c\u003C\/span\u003E\n \u003Cp class=\u0022tw-font-serif tw-italic\u0022\u003EA combination of diet and taking antibiotics might play a role in shifting our gut microbial community.\r\n\u003C\/p\u003E\n \u003Cfooter\u003E\n \u003Ccite class=\u0022tw-not-italic tw-font-normal tw-text-sm tw-text-black\u0022\u003EProfessor Paul Wilmes, ExpoBiome\u003C\/cite\u003E\n \u003C\/footer\u003E\n\u003C\/blockquote\u003E\n\u003C\/p\u003E\n\n\u003Cp\u003EWhile Parkinson\u2019s is regarded as a brain disorder, there can be early signs in the gut that something is wrong, according to Wilmes.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018The molecular hallmarks of the disease appear early on in gut nerve cells, well before the classical symptoms involving movement problems appear,\u2019 he said.\u003C\/p\u003E\n\n\u003Cp\u003EWilmes said it\u2019s possible molecules made by gut bacteria kick off a cascade that eventually spreads to the brain or exacerbate the disease, perhaps by increasing inflammation.\u003C\/p\u003E\n\n\u003Cp\u003EOn the other hand, changes to the microbiome could be a consequence of Parkinson\u2019s disease rather than the cause.\u003C\/p\u003E\n\n\u003Cp\u003EIn either case, the research being carried out could allow doctors to diagnose the disease earlier in some patients or intervene before symptoms become more severe.\u0026nbsp;\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cstrong\u003EHealthy versus sick\u003C\/strong\u003E\u003C\/p\u003E\n\n\u003Cp\u003EWilmes, who started his career studying microbes in the environment before being drawn to those in the human body, is now comparing microbiome samples taken from healthy people and sick ones.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018A combination of diet and taking antibiotics might play a role in shifting our gut microbial community towards the cluster of organisms that we see, for example, in Parkinson\u2019s disease,\u2019 he said.\u003C\/p\u003E\n\n\u003Cp\u003EWilmes is also studying the impact of the gut on rheumatoid arthritis, an autoimmune and inflammatory disease in which the immune system attacks a patient\u2019s joints.\u003C\/p\u003E\n\n\u003Cp\u003EExactly how these microorganisms play a role in the disease is a mystery that he is keen to solve.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018It might be that a molecule or a mixture of molecules from the microbiome triggers the initial inflammatory response that then goes haywire,\u2019 Wilmes said.\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cstrong\u003EIntestinal ID\u003C\/strong\u003E\u003C\/p\u003E\n\n\u003Cp\u003EOne-third of microorganisms in the intestines \u2013 the gut microbiota\u0026nbsp;\u2013 is common to most people, while two-thirds are specific to each person, according to the\u0026nbsp;\u003Ca href=\u0022https:\/\/www.embl.org\/\u0022\u003EEuropean Molecular Biology Laboratory\u003C\/a\u003E\u003C\/p\u003E\n\n\u003Cp\u003EIn other words, the microbiota in the human intestine is like an individual identity card.\u003C\/p\u003E\n\n\u003Cp\u003EIn future, the hope is that patients will routinely have their microbiome decoded when they visit a doctor\u2019s office or a hospital.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018There are thousands of clinical trials going on to try to establish a link between the microbiome and a number of different diseases,\u2019 said Walid Hanna, chief executive officer of a Belgian start-up called Perseus Biomics.\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cblockquote class=\u0022tw-text-center tw-text-blue tw-font-bold tw-text-2xl lg:tw-w-1\/2 tw-border-2 tw-border-blue tw-p-12 tw-my-8 lg:tw-m-12 lg:tw--ml-16 tw-float-left\u0022\u003E\n \u003Cspan class=\u0022tw-text-5xl tw-rotate-180\u0022\u003E\u201c\u003C\/span\u003E\n \u003Cp class=\u0022tw-font-serif tw-italic\u0022\u003EThere are thousands of clinical trials going on to try to establish a link between the microbiome and a number of different diseases.\r\n\r\n\u003C\/p\u003E\n \u003Cfooter\u003E\n \u003Ccite class=\u0022tw-not-italic tw-font-normal tw-text-sm tw-text-black\u0022\u003EWalid Hanna, Perseus MAP\u003C\/cite\u003E\n \u003C\/footer\u003E\n\u003C\/blockquote\u003E\n\u003C\/p\u003E\n\n\u003Cp\u003EThe work requires sequencing the DNA to work out which microbial strains are present.\u003C\/p\u003E\n\n\u003Cp\u003EHanna and his team are part of a two-year project \u2013 \u003Ca href=\u0022https:\/\/cordis.europa.eu\/project\/id\/190119214\u0022\u003EPerseus MAP\u003C\/a\u003E\u0026nbsp;\u2013 that received EU funding for 24 months through September 2023 to analyse the microbiome of patients in a way that is cheaper and faster than existing technologies.\u003C\/p\u003E\n\n\u003Cp\u003ETheir strategy reduces the quantity of DNA that needs to be decoded by labelling sequences with fluorescent markers and by using an automated microscope to compare the generated light patterns with a database of some 15\u0026nbsp;000 microbial species.\u003C\/p\u003E\n\n\u003Cp\u003EThis will make it possible to decode DNA from a patient\u2019s stool or cell sample within 72 hours.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018A lot of sequencing technologies today take weeks to get results back on the microbiome of patients,\u2019 said Hanna, who has two decades of experience in the medical-technology sector.\u003C\/p\u003E\n\n\u003Cp\u003EThe ultimate goal is a printer-size device able to deliver results quickly to researchers, pharmaceutical companies, personalised nutrition businesses or hospitals.\u003C\/p\u003E\n\n\u003Cp\u003EThe new profiling system, DynaMAP\u2122, is due to be released towards the end of 2024, according to Hanna.\u003C\/p\u003E\n\n\u003Cp\u003EThe Perseus MAP technology will make microbiome profiling much more accessible and could allow medical experts to spot the beginnings of a chronic disease before it progresses.\u003C\/p\u003E\n\n\u003Cp\u003E\u003Cstrong\u003EDiet lessons\u003C\/strong\u003E\u003C\/p\u003E\n\n\u003Cp\u003EWhat people eat affects the types of microbes in the gut.\u003C\/p\u003E\n\n\u003Cp\u003EThat means gut-microbiome troubles can be addressed through not only drugs but also nutrition, according to Wilmes of ExpoBiome.\u003C\/p\u003E\n\n\u003Cp\u003EA diet high in processed foods or refined sugars tends to favour fast-growing gut microorganisms, which are often implicated in causing disease.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018The vast majority of the organisms that are beneficial to us are typically slow-growing,\u2019 Wilmes said.\u003C\/p\u003E\n\n\u003Cp\u003EFoods that are preferable because they appeal to slow-growing bugs include the Mediterranean diet, a plant-based cuisine that centres on cereals, vegetables, fruits and olive oil and is rich in antioxidants, fibre and vitamins.\u003C\/p\u003E\n\n\u003Cp\u003EIn the case of rheumatoid arthritis, drastic changes in eating habits such as fasting can reset the microbiome in patients and cause the disease to go into remission.\u003C\/p\u003E\n\n\u003Cp\u003EBy analysing the DNA sequences in a patient\u2019s gut microbiome, Wilmes is learning more about the types of microbes present in diseases including Parkinson\u2019s and rheumatoid arthritis.\u003C\/p\u003E\n\n\u003Cp\u003EThe work will help determine which molecules are involved either in triggering the disease or in protecting against it, enabling better diagnoses and treatments.\u003C\/p\u003E\n\n\u003Cp\u003E\u2018We need to work out what is a healthy cocktail of molecules in our gut and how we can prevent shifts which trigger diseases,\u2019 Wilmes said.\u003Cbr \/\u003E\n\u003Cbr \/\u003E\n\u003Cem\u003EResearch in this article was funded by the EU via the European Research Council (ERC) and the European Innovation Council (EIC). 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